Survival-associated meQTLs across different cancer types


We identified 23,432 meQTLs associated with patient overall survival across different cancer types at FDR < 0.05.


e.g., "BLCA"
e.g., "rs11600543"


Cancer type
SNP ID
SNP position (hg19)
Alleles (A/a)
log-rank test p-value
Sample size
Median survival time AA
Median survival time Aa
Median survival time aa
Dispaly
LAML rs17692029 chr2:174128270 A/T 0.000138 109 16.3 11.17 0 KM Plot
LAML rs17722795 chr19:16243795 T/C 8.37E-5 109 16.23 7.13 0 KM Plot
LAML rs17742906 chr2:174127886 C/T 0.000141 111 16.3 11.67 0 KM Plot
LAML rs17742924 chr2:174127970 T/C 0.000115 111 16.3 11.17 0 KM Plot
LAML rs17751406 chr14:77935940 A/C 0.000164 111 13.1 21.78 1.02 KM Plot
LAML rs17751412 chr14:77936969 G/T 0.000164 111 1.02 21.78 13.1 KM Plot
LAML rs17767256 chr17:28581043 A/C 9.61E-5 111 19.82 15.7 6.1 KM Plot
LAML rs17795796 chr19:16246477 T/C 7.61E-5 110 16.23 8.13 0 KM Plot
LAML rs17795814 chr19:16246764 C/G 7.61E-5 110 16.23 8.13 0 KM Plot
LAML rs17799226 chr14:90754538 C/T 1.32E-5 108 13.2 21.87 1.03 KM Plot
LAML rs17824214 chr14:77924227 A/G 0.000181 110 13.1 20.27 1.02 KM Plot
LAML rs17824322 chr14:77931223 C/T 0.000164 111 13.1 21.78 1.02 KM Plot
LAML rs17824810 chr22:49378255 C/T 2.62E-5 111 13.1 22.37 2.03 KM Plot
LAML rs17833935 chr19:33921388 G/A 1.27E-5 111 17.23 9.13 3 KM Plot
LAML rs17833947 chr19:33921542 A/C 1.27E-5 111 17.23 9.13 3 KM Plot